AnVIL Collection
Courses and Guides
Please check out our full collection of AnVIL and related resources below!
This page was last updated on 2023-09-23 03:05:06
AnVIL Resources
| Book Name | Description | Topics |
|---|---|---|
| AnVIL Demos | ⏱ 30-minute demos and tutorials from our live AnVIL series | anvil, cloud, cloud-computing, genomics, research |
| AnVIL Instructor Guide | A guide for instructors using AnVIL for workshops, lessons, or courses. | anvil, education |
| AnVIL Urban Genomics: Identifying population structure among feral pigeon populations | Lab module and lectures for exploring PCA using feral pigeon populations | anvil, genomics, pca, urban-data-science |
| AnVIL WDL Workflows | Raw WDL workflow files for use on AnVIL and other platforms | anvil, genomics, wdl, workflows |
| AnVIL: SRA Data | Pull Sequence Read Archive (SRA) data into AnVIL | anvil, genomics, ncbi-database, sequence-read-archive |
| AnVIL: Subsetting Your Data with WDL | Tutorial for running the fastq_subsample WDL workflow on AnVIL! | anvil, genomics, wdl, wdl-workflow, workflow |
| Epigenetics on AnVIL: Nature vs Nurture | An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser. | anvil, course, epigenetics, human-genomes, module, ucsc-browser |
| Getting Started on AnVIL | A guide for getting started using AnVIL | anvil, cloud-computing |
| Molecular Phylogenetic Techniques | A semester-long course on the basics of molecular phylogenetic techniques | anvil, r-programming |
GDSCN Resources
| Book Name | Description | Topics |
|---|---|---|
| GDSCN Book: SARS with Galaxy on AnVIL | Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy | anvil, gdscn, genomics, module, sars-cov-2, variant-detection |
| GDSCN Book: SARS with RStudio on AnVIL | Lab module and lectures for identifying phylogenetic history of SARS variants using R | anvil, gdscn, phylogenetic-analysis, sars-cov-2 |
| Intro R with swirl | Lab exercise: learn basic R programming through interactive swirl lessons | gdscn, swirl |
| Statistics for Genomics: Differential Expression | A set of lab modules for an introduction to differential gene expression | anvil, cloud-computing, gdscn, gene-expression |
| Statistics for Genomics: PCA | A set of lab modules for PCA analysis | anvil, gdscn, genomics |
| Statistics for Genomics: scRNAseq | A set of lab modules for single cell RNA-seq analysis | anvil, gdscn, rna-seq, scrna-seq |