University of Michigan ITN Workshops

Welcome to the ITN University of Michigan Workshop Series!

Over the next two days we will cover the a variety of bioinformatics topics. Please feel free to refer to these materials in the future.

Wifi: {FILLIN}

Website: bit.ly/{FILLIN}

Schedule

Day 1 (FILL IN Room) - April 8: Time
Introduction to Reproducibility 9:30 AM - 11:00 AM
Intermediate and Advanced Reproducibility 11:30 AM - 1:00 PM
Free Lunch! 1:00 PM - 2:00 PM
Analyzing Clinical Data 2:00 PM - 3:30 PM
Day 2 (FILL IN ROOM) - April 9: Time
Choosing Genomics Tools 9:30 AM -11:00 AM
Tools for Spatial Transcriptomics 11:30AM - 1:00 PM
Free Lunch! 1:00 PM - 2:00 PM
Introduction to UM Resources 2:00 PM - 3:00 PM


Pre-requisites

This information was emailed to you, but you will need to register for the following resources based on the workshops you will be attending:

Day 1 Workshops GitHub GitHub Desktop Docker Desktop PositCloud
Introduction to Reproducibility checkmark icon checkmark icon
Intermediate and Advanced Reproducibility checkmark icon checkmark icon checkmark icon
Analyzing Clinical Data checkmark icon
Day 2 Workshops GenePattern spatialGE
Choosing Genomics Tools checkmark icon
Tools for Spatial Transcriptomics checkmark icon


If you do not have a GitHub account or a preferred git client, please create your own GitHub account and install GitHub Desktop: - Create a GitHub account using the “Sign up” button in the top right. - Download GitHub Desktop

Install Docker and Docker Desktop if you don’t already have it installed by following these instructions (If you absolutely cannot install Docker you can try to install Podman as an alternative)

To create a Posit Cloud account, go to the Posit Cloud website and sign up with any of the shown methods.

To create a GenePattern account, go to the GenePattern website and click the “Click to Register” link above the login prompt.

To create a spatialGE account, go to spatialGE Website and click on “Sign Up” in the upper right corner.