Chapter 2 Bringing the WDL Workflow to AnVIL

2.1 Find the Workflow on Dockstore

Navigate to the WORKFLOWS tab of your workspace. Select “Find a Workflow”.

The WORKFLOWS tab of AnVIL workspace is selected, with the Find a Workflow button highlighted.

When the dialog box opens, select “Dockstore” on the bottom left. This will take you to the Dockstore search page.

The Suggested Workflows popup. The option to find additional workflows on Dockstore is highlighted.

Enter fastq_subsample in the search box. Select the workflow “fhdsl/AnVIL_WDLs/fastq_subsample”.

On Dockstore, fastq_subsample has been entered in the search box. There is one result, for a WDL workflow called fastq_subsample.

On the right side “Launch with” menu, select “AnVIL”. This will open a new tab.

The AnVIL button on the Launch with menu is highlighted.

Select the appropriate workspace where you want the workflow to appear. Select “IMPORT”.

On an AnVIL themed page, the user has selected the epigenetics-introduction workspace and the IMPORT button is highlighted.

You should now be back on AnVIL!