AnVIL Collection
Courses and Guides
Please check out our full collection of AnVIL and related resources below!
This page was last updated on 2024-12-01 03:28:38.810592
AnVIL Resources
| Book Name | Description | Topics |
|---|---|---|
| AnVIL Champions | One-stop resource for AnVIL Champions | anvil, guide |
| AnVIL CoFests! 2024 | Information about AnVIL Community Conference CoFest Sessions - November 2024 | anvil, conference, workshops |
| AnVIL Demos | ⏱ 30-minute demos and tutorials from our live AnVIL series | anvil, cloud, cloud-computing, course, genomics, module, research |
| AnVIL Instructor Guide | A guide for instructors using AnVIL for workshops, lessons, or courses. | anvil, course, education, guide |
| AnVIL Urban Genomics: Identifying population structure among feral pigeon populations | Lab module and lectures for exploring PCA using feral pigeon populations | anvil, course, genomics, pca, urban-data-science |
| AnVIL WDL Workflows | Raw WDL workflow files for use on AnVIL and other platforms | anvil, genomics, wdl, workflows |
| AnVIL: SRA Data | Pull Sequence Read Archive (SRA) data into AnVIL | anvil, course, genomics, module, ncbi-database, sequence-read-archive |
| AnVIL: Subsetting Your Data with WDL | Tutorial for running the fastq_subsample WDL workflow on AnVIL! | anvil, course, genomics, module, wdl, wdl-workflow, workflow |
| Epigenetics on AnVIL: Nature vs Nurture | An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser. | anvil, course, epigenetics, human-genomes, module, ucsc-browser |
| Getting Started on AnVIL | A guide for getting started using AnVIL | anvil, cloud-computing, course, genomics, guide |
| Molecular Phylogenetic Techniques | A semester-long course on the basics of molecular phylogenetic techniques | anvil, course, phylogenetics, r-programming |
| WDL Workflows | Running and writing your first WDL workflow on AnVIL for absolute beginners. | anvil, course, genomics, module, wdl, workflows |
GDSCN Resources
| Book Name | Description | Topics |
|---|---|---|
| AnVIL Collection | 📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects | anvil, content-library, edtech-software, gdscn, website |
| BioDIGS: Antimicrobial Resistance | This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy. | biodigs, course, gdscn, module |
| BioDIGS: Biosynthetic Gene Clusters | This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration of biosynthetic gene clusters in the BioDIGS samples using Galaxy | biodigs, biosynthetic-gene-clusters, course, gdscn, metagenomics, module |
| BioDIGS: Exploring Soil Data | This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R. | anvil, biodigs, course, gdscn, module |
| BioDIGS: Getting Started | Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS. | anvil, biodigs, course, gdscn, r-programming, tutorial |
| BioDIGSData | Data Package for BioDIGS Project | biodigs, edtech-software, gdscn |
| GDSCN Book: SARS with Galaxy on AnVIL | Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy | anvil, course, gdscn, genomics, module, sars-cov-2, variant-detection |
| GDSCN Book: SARS with RStudio on AnVIL | Lab module and lectures for identifying phylogenetic history of SARS variants using R | anvil, course, gdscn, module, phylogenetic-analysis, sars-cov-2 |
| Intro R with swirl | Lab exercise: learn basic R programming through interactive swirl lessons | course, gdscn, module, swirl |
| Statistics for Genomics: Differential Expression | A set of lab modules for an introduction to differential gene expression | anvil, cloud-computing, course, gdscn, gene-expression, genomics, module |
| Statistics for Genomics: PCA | A set of lab modules for PCA analysis | anvil, course, gdscn, genomics, module, pca |
| Statistics for Genomics: scRNAseq | A set of lab modules for single cell RNA-seq analysis | anvil, course, gdscn, module, rna-seq, scrna-seq |