| Book Name | Description | Topics |
|---|---|---|
|
This course the second course in a two part series that discusses reproducibility in the context of cancer informatics. |
python, r, reproducibility, version-control |
|
|
DaSL’s course on AI skills for software development and programming |
artificial-intelligence, chatbot, course, learn-ai, llm, llms, software-learning |
|
|
An introductory activity for epigenetics, or the idea of “nature versus nurture” in genetics. Learners use the UCSC Genome Browser. |
anvil, course, epigenetics, human-genomes, module, ucsc-browser |
|
|
A guide for getting started using AnVIL |
anvil, cloud-computing |
|
|
A guide for instructors using AnVIL for workshops, lessons, or courses. |
anvil, education |
|
|
📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects |
content-library, website |
|
|
Tutorial for running the fastq_subsample WDL workflow on AnVIL! |
anvil, genomics, wdl, wdl-workflow, workflow |
|
|
⏱ 30-minute demos and tutorials from our live AnVIL series |
anvil, cloud, cloud-computing, genomics, research |
|
|
A semester-long course on the basics of molecular phylogenetic techniques |
anvil, r-programming |
|
|
Pull Sequence Read Archive (SRA) data into AnVIL |
anvil, genomics, ncbi-database, sequence-read-archive |
|
|
An OTTR spinoff template for creating AnVIL content |
anvil, template |
|
|
Lab module and lectures for exploring PCA using feral pigeon populations |
anvil, genomics, pca, urban-data-science |
|
|
Raw WDL workflow files for use on AnVIL and other platforms |
anvil, genomics, wdl, workflows |
|
|
|
NA |
|
|
Baltimore Community Data Science Course at JHSPH through partnership with SOURCE |
community-outreach, course, data-science |
|
|
A course to help learners find resources and tools to help them process and interpret their genomic data |
NA |
|
|
A repository with tips about code review and implementing it in a lab |
codereview, fhdasl, training |
|
|
The course covers the key underlying principles and concepts in computing. It covers concrete discussions of the differences between cloud and local computing. The course highlights a number of computing options and etiquette for using shared resources. |
computing, informatics |
|
|
Client for the Microsoft Cognitive Services Text to Speech REST API (reboot of the mscstts package) |
azure, r, text-to-speech, tts |
|
|
📚 An auto-generating library of all Data Science Lab Github-based content |
content-library, website |
|
|
A DaSL training “snack” covering the benefits and basics of using Git and GitHub to support your biomedical data science work. |
NA |
|
|
UW Summer Institute in Statistics: Data Wrangling in R |
data-science, data-wrangling, r-programming, r-stats, tidyverse |
|
|
How to Create an R package Course |
data-science, package-development, r-package |
|
|
The re-organized DataTrail curriculum https://www.datatrail.org/ |
NA |
|
|
Guides for how to launch a DataTrail program |
NA |
|
|
API wrapper for Google Classroom and a bit of Google Forms API too |
NA |
|
|
|
NA |
|
|
A course to cover the basics of creating documentation and tutorials to maximize the usability of informatics tools |
documentation, software-development |
|
|
This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective. |
data, ethics, privacy, research, security |
|
|
This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats. |
command-line, computing-cluster, course, fredhutch, hpcc |
|
|
An emerging course for effective use of FH Computing. |
NA |
|
|
A LaTeX template for Fred Hutch letterhead |
latex, letterhead, template |
|
|
An introduction to using Cromwell and WDL at the Fred Hutch |
course, fredhutch, wdl |
|
|
Info about designing, optimizing and deploying your own WDL workflows |
course, fredhutch, openwdl, wdl, workflows |
|
|
Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy |
anvil, gdscn, genomics, module, sars-cov-2, variant-detection |
|
|
GDSCN: Statistics for Genomics Differential Expression (github) |
A set of lab modules for an introduction to differential gene expression |
anvil, cloud-computing, gdscn, gene-expression |
|
A set of lab modules for PCA analysis |
anvil, gdscn, genomics |
|
|
[WORK IN PROGRESS] A set of lab modules for RNA-seq analysis |
NA |
|
|
A set of lab modules for single cell RNA-seq analysis |
anvil, gdscn, rna-seq, scrna-seq |
|
|
Lab exercise: learn basic R programming through interactive swirl lessons |
gdscn, swirl |
|
|
Lab module and lectures for identifying phylogenetic history of SARS variants using R |
anvil, gdscn, phylogenetic-analysis, sars-cov-2 |
|
|
Guidance on supporting multidisciplinary teams in cancer informatics. |
diversity, informatics, leadership |
|
|
A 2-week introduction to R programming course, with a focus on public health datasets |
beginner, beginner-friendly, beginner-programming, course, public-health, r-programming, tidyverse |
|
|
source code for the JHU Data Science Lab website |
website |
|
|
Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy. |
data-management, data-sharing, grant-proposals, nih |
|
|
OTTR: Open-source Tools for Training Resources. This is template repository for creating online courses to be published on multiple platforms. See here: https://jhudatascience.org/OTTR_Template/ for a rendered version. |
education, online-learning, open-source |
|
|
Template to create websites with checks for broken urls and spelling, as well as automated rendering. This is an offshoot of the OTTR_Template (https://github.com/jhudsl/OTTR_Template). |
NA |
|
|
The website for OTTR |
NA |
|
|
Tools for converting OTTR courses into Leanpub or Coursera courses :otter: |
NA |
|
|
The course covers basic information about why LaTeX can be useful, how to get started in Overleaf using LaTeX with a template, how to work with a team on Overleaf, and what to do when you encounter problems. |
latex, overleaf, scientific-publications |
|
|
Where RDI curates the DaSL Data Science Personas |
data-science, personas, training |
|
|
This course discusses reproducibility and replicability in the context of cancer informatics. |
data-science, informatics, python, r, reproducibility |
|
|
A 4-day introduction to R programming, focused on Fred Hutch Research Interns |
beginner, beginner-friendly, data-analysis, data-science, introduction-to-programming, r-programming, tidyverse |
|
|
Text to Speech |
speech-synthesis, text-to-speech, tts, voice |
|
|
Tidyverse Skills for Data Science in R |
r, tidyverse |
|
|
Website for the Uplift Hub |
NA |
|
|
A gentle introduction to Leanpub |
education, leanpub |
The Automated R Instructor
The swirl Course Network - A Repository for swirl
Courses
This page was last updated on 2023-09-23 03:06:42