Chapter 15 References

Bauchner, Howard, Robert M. Golub, and Phil B. Fontanarosa. 2016. Data Sharing: An Ethical and Scientific Imperative.” JAMA 315 (12): 1238–40. https://doi.org/10.1001/jama.2016.2420.
Beaulieu-Jones, Brett K, and Casey S Greene. 2017. “Reproducibility of Computational Workflows Is Automated Using Continuous Analysis.” Nature Biotechnology 35 (4): 342–46. https://doi.org/10.1038/nbt.3780.
Broman, Karl. 2016. “Tools for Reproducible Research.” https://kbroman.org/Tools4RR/.
Bryan, Jenny. 2017. “Project-Oriented Workflow.” Tidyverse Blog. https://www.tidyverse.org/blog/2017/12/workflow-vs-script/.
Bryan, Jenny, and Jim Hester. 2021. “Happy Git and GitHub for the useR.” https://happygitwithr.com/.
Colavizza, Giovanni, Iain Hrynaszkiewicz, Isla Staden, Kirstie Whitaker, and Barbara McGillivray. 2020. “The Citation Advantage of Linking Publications to Research Data.” PLOS ONE 15 (4): e0230416. https://doi.org/10.1371/journal.pone.0230416.
“How Do You Manage Your Files & Directories for Your Projects?” 2010. www.biostars.org/p/821/.
“Introduction to the Command Line for Genomics.” 2019. https://bioinformatics-core-shared-training.github.io/shell-genomics/07-organization/index.html.
Navarro, Danielle. 2021. “Project Structure.” https://www.youtube.com/playlist?list=PLRPB0ZzEYegPiBteC2dRn95TX9YefYFyy.
“Project Organization and Management for Genomics.” 2021. https://datacarpentry.org/organization-genomics/.
Severin, Andrew. 2021. “Project Management.” Bioinformatics Workbook. https://bioinformaticsworkbook.org/projectManagement/Intro_projectManagement.html.
Shapiro, Joshua A., Candace L. Savonen, Allegra G. Hawkins, Chante J. Bethell, Deepashree Venkatesh Prasad, Casey S. Greene, and Jaclyn N. Taroni. 2021. Childhood Cancer Data Lab Training Modules.”
Tayo, Benjamin Obi. 2019. “How to Organize Your Data Science Project.” Medium. https://towardsdatascience.com/how-to-organize-your-data-science-project-dd6599cf000a.
Thessen, Paul AND Patterson, Anne E. AND Bogdan. 2021. “From Reductionism to Reintegration: Solving Society’s Most Pressing Problems Requires Building Bridges Between Data Types Across the Life Sciences.” PLOS Biology 19 (3): 1–12. https://doi.org/10.1371/journal.pbio.3001129.
Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, et al. 2016. “The FAIR Guiding Principles for Scientific Data Management and Stewardship.” Scientific Data 3 (1): 160018. https://doi.org/10.1038/sdata.2016.18.